Best Shopify Quickbooks Apps

51 Best Quickbooks Apps for Shopify in 2026

Open Payout

Open Payout automates accounting for Shopify sellers worldwide. Each time you receive a Shopify payout Open Payout will create an invoice or Journal Entry that matches exactly wit...
Pipe17 Connect: MCF

Use your Amazon Inventory to Fulfill your Shopify Orders Pipe17’s Connect:MCF app lets sellers easily use their Amazon FBA inventory to fulfill orders placed through their Shopify...
Goods Order Inventory

Goods Order Inventory (GOIS) is a cloud based inventory and order management system that caters all types of businesses and runs over platforms like Web Browser, Android Smartphon...
Flowify for QuickBooks

Automated Accounting From Shopify to QuickBooks Flowify is a Shopify accounting application that integrates all revenue, product sales, inventory, refunds, processing fees, bank d...
Qwibo: Payouts for Quickbooks

The easy way to integrate your store with Quickbooks We understand how frustrating it is to find the right solution for your store. As merchants, we know how you operate and we b...
Coefficient ‑ Data Exporter

Coefficient is a no-code solution that connects your spreadsheets to your company systems to accelerate your work. Easily sync Google Sheets to business systems like Salesforce, H...
Onport‑Marketplace & Dropship

Automate your dropshipping! Automatically put your orders in your vendors’ stores, integrate with all major platforms, pay vendors, sync inventory updates and so much more! A Comp...
A2X Quickbooks or Xero Sync

One Click Reconciled Shopify Accounting, Trusted by 1000s of stores A2X automates accounting for Shopify stores worldwide using Xero, QuickBooks & Sage. Trusted by hundreds of...
ActionShip

Streamline Shipping, Accounting with QuickBooks , and Inventory management by connecting Shopify with ActionShip by Teapplix. Automated & economic shipping for Shopify orders...
QuickBooks AutomatoR

Export Shopify orders to Quickbooks Online Export your Shopify orders and sync to your QuickBooks Accounting online with our QuickBooks AutomatoR application for Shopify. Export ...
T‑HUB‑Online

Multi-channel order manager T-HUB Online is a cloud based order manager solution for online merchants. Fetch orders from your ecommerce websites, pint packing list, compare shippi...
Xero, QuickBooks or MYOB Sync

How it works On a daily basis, the integration will sync a summary of your previous day’s orders data from Shopify into Xero, QuickBooks Online or MYOB generating an invoice. You ...
QuickBooks Online Sync

Webgility's Modern Commerce Workspace is designed to work with QuickBooks and brings together all your commerce apps, like Shopify, Amazon, WooCommerce, eBay, Etsy, and more. With...
QuickBooks, Xero sync ‑ Synder

The fastest sync with easy set up Live sync of your Shopify store sales with all details like processor fees, taxes, and order information accounted for to Xero and QuickBooks. Sy...
KashFlow Integration by CTO

Multiple Stores? No problem. You can connect multiple Shopify stores to a single KashFlow account*. Connect Shopify and KashFlow with CarryTheOne Link your Shopify store(s) with K...
Accounting and ERP Integration

Connect your Shopify Store with any ERP or Accounting Package The eBridge Connections integration app connects Shopify with the leading ERP and accounting packages such as Microso...
ChannelSale

About: ChannelSale App connects your Shopify store to Automatically Sync Product Listings, Inventory, Orders & Shipping Tracking with most Major online Shopping Sites! Founde...
Connectify

Connectify simplifies your work and life by becoming the personal assistant you never knew you needed! Get automatic and seamless notifications of workflow and activities across a...
Novo

Get powerfully simple online business banking by signing up for Novo. Connect your Shopify account and instantly increase transparency into your business's sales -- all from withi...
QuickBooks Online

Seamlessly connect your online sales channels to QuickBooks. Automatically bring in your sales orders and payouts from your Shopify store and other sales channels so that nothing...
PIMdesk

PIMdesk is the robust Product Information Management (PIM) system available. PIMdesk allows you to automatically import product data from Shopify and seamlessly export data to Sh...
PandaFlow Integration

Pandaflow allows you to easily connect your store to other applications like NetSuite, Salesforce, HubSpot, and QuickBooks Integrate with other Apps Sync Customers Sync Orders Sy...
Quickbooks Sync by Bold

Automatically sync your Shopify orders to your QuickBooks Online account and enjoy seamless financial reporting with just a couple of clicks. Automatic Daily Sync Quickly and easi...
QuickBooks Online Global

Save time and stay ahead of your bookkeeping when you integrate Shopify with QuickBooks Online International-only. Easily manage the connection between Shopify and QuickBooks Onli...
QuickBooks Online + Commerce

Manage everything from orders and inventory to bookkeeping with QuickBooks Commerce. Bundled with QuickBooks Online for more organized accounting, Commerce syncs with Shopify so y...
QuickBooks Bridge

Sync your Shopify data with your MYOB or QuickBooks Online account automatically. Our app will sync your Customers, Products, and Orders from Shopify to MYOB or QuickBooks Online....
4PsiteLink (4P)

4Psite centralizes your Shopify stores, as well as other marketplaces, into one fully integrated order management system allowing for streamlined processes. We support over 40 dif...
Incubate Me

Connect your back-end systems all-at-once; automatically track, aggregate, and generate business reports per your preference Key features: Connect to Shopify, Quickbooks, and you...
Agiliron

Try the Agiliron Complete OmniChannel Commerce Suite.Who is Agiliron for? For businesses with INVENTORY For businesses who SELL PRODUCTS Retailers - eCommerce, Brick & Mortar...
Niblin

Automate your accounting We have created Niblin to help you automate your accounting and bookkeeping. We create a bridge between your store in shopify and your account on xero or ...
QuickBooks & Xero Sync

Automatic & Simple taxomate makes it easy for you to import Shopify sales, fees, refunds, adjustments, and payout transactions into your accounting software. Once imported int...
Finaloop

Shopify merchants enjoy 30 days of FREE services with Finaloop.Why Finaloop? Finaloop's dedicated accounting experts will get your books and taxes right for a fraction of the cost...
Exportly‑Quickbooks Xero Sync

Exportly will instantly create a Quickbooks Online Sales receipt/Invoice or Xero Invoice for every order placed on your store. Additionally, Exportly will create a QBO bill by aut...
Connex for QuickBooks Desktop

Works with QuickBooks Online and Enterprise Please review our Connex for QuickBooks Online listing. Save in taxes Many businesses learn the hard way that they have been paying too...
Uphance Apparel ERP

The backend powering successful apparel brands Uphance is an apparel management system helping with product development, sales, inventory, order management, and production managem...
Ecominate

The missing piece to complete your e-commerce accounting stack Ecominate offers a powerful suite of analytics, inventory management, and accounting tools to streamline your e-comm...
Xero or QuickBooks Sync

Finally, Shopify bookkeeping that’s accurate and automatic. Trusted by thousands of e-commerce sellers and leading accountants to ensure their bookkeeping is accurate, efficient, ...
Fulcrum 3PL

Easy to use Fulcrum is a cloud-based ecommerce fulfillment, warehouse management and multi-carrier shipping software provider. Each component works together to provide a comprehen...
Streamlined

Streamlined – The best B2B invoicing solution for Shopify Streamlined was built to help fast-growing brands automate b2b invoicing, making it blazing fast and easy to manage. With...
Ignite: QuickBooks Online Sync

The Shopify app allows users to sync data from Shopify to QuickBooks Online up to 60 days old. For non-tech-savvy shop owners, the app has a simpler user interface. The app resync...
QuickBooks Desktop

Sync your Shopify data with your QuickBooks Desktop automatically with our app. Our app will sync your Customers, Products, and Orders from Shopify to QuickBooks Desktop. Daily A...
PayTraQer

PayTraQer automates your bookkeeping with a simple interface, intuitive workflow and improved accuracy. With PayTraQer, you will always get perfectly balanced books, updated inven...
Bookkeep: Quickbooks/Xero Sync

Summarize Orders Into One Post, Sync to QuickBooks or Xero & Reconcile Payouts to Your Bank Feed—Automatically! You set up your account and chart of accounts once. We post a s...
AltheaSuite

AltheaSuite is a complete inventory and business management solution. AltheaSuite is a cloud based solution that works on all devices that can run a web browser. This modern solut...
EasyEcom Inventory Management

Sell, Reconcile, and grow Your time is better spent in serving your customers rather than updating accounting, managing orders, updating stock levels. EasyEcom allows you to focus...
ApparelMagic Cloud

As the fashion industry’s favorite software, ApparelMagic Cloud is an all-in-one solution with integrated ERP, CRM, PLM, and Manufacturing. Your products are the lifeblood of your...
Finale Inventory Connector

The complete inventory management solution Finale Inventory is designed to be an adaptable and flexible inventory management system to support the workflows of your growing busine...
Ventipix Inventory Manager

Ventipix Asset & Inventory Manager enables you to track fixed/portable assets and inventory online and in real-time. It comes with a smartphone app (iOS & Android) for sca...
CashControl: Demand Forecasts

Instant Cash Control Spend minutes, not days, building a cash flow forecast that uses real-time updates to put you in control of your cash flow and runway. All without paying big ...
QuickBooks Enterprise Sync

Webgility's Modern Commerce Workspace is designed to work with QuickBooks Pro/Premier/Enterprise and brings together all your commerce apps, like Shopify, Amazon, WooCommerce, Ets...
RAKT: Inventory Management

What is RAKT? RAKT is an app that simplifies your inventory, automates purchase orders and vendor management. Why should you choose RAKT? The problem with most inventory managemen...

Shopify Quickbooks Apps

If you're in the market for the best 51 Best Shopify Quickbooks Apps Shopify apps, we've curated an epic list to save you time and headaches!